WTO
From SGenomics
florence/data/lindah/illumina_projects/Bahram1/BahramWTCHG_19_3_09/
/Net/shiraz/scratch/GA-DATA/090316_GAII01_0006/Data/IPAR_1.3/Bustard1.3.2_19-03-2009_johnb/GERALD_19-03-2009_johnb/s_1_sequence.txt
LANE 7 is PHIX
florence: analysis
pinot shiraz: /scratch/nawa merlot
Quality scores from lane 7 (phix):
Score count
0 0 1 0 2 0 3 0 4 0 5 0 6 0 7 0 8 0 9 0 10 0 11 0 12 0 13 0 14 0 15 0 16 151 17 32 18 391 19 2439 20 3763 21 1766 22 844 23 634 24 685 25 885 26 1191 27 1599 28 1770 29 2250 30 2984 31 4373 32 7979 33 18980 34 64626 35 357632 36 3779027 37 0 38 0 39 0
Error by quality
33 97720 838452 0.116548 9.33495 35 17862 43627 0.409425 3.87825 36 5358 14744 0.363402 4.39613 37 33707 108677 0.310158 5.08418 38 43846 175104 0.2504 6.01366 39 38508 192066 0.200494 6.979 40 22680 158466 0.143122 8.44293 41 20180 187471 0.107643 9.68013 42 11716 139429 0.0840284 10.7557 43 11053 134426 0.0822237 10.85 44 8068 127222 0.0634167 11.978 45 11204 193361 0.0579434 12.37 46 8188 188986 0.043326 13.6325 47 11124 290865 0.0382445 14.1743 48 9638 331937 0.0290356 15.3707 49 10208 453967 0.0224862 16.4808 50 9832 552916 0.0177821 17.5002 51 9161 674188 0.0135882 18.6684 52 10073 903546 0.0111483 19.5279 53 8242 954868 0.00863156 20.6391 54 7718 1195280 0.00645706 21.8996 55 8370 1437259 0.00582359 22.3481 56 6664 1548586 0.00430328 23.662 57 8116 2165405 0.00374803 24.262 58 8062 2566832 0.00314084 25.0295 59 8756 3460082 0.00253058 25.9678 60 10540 5157969 0.00204344 26.8964 61 13321 8081155 0.0016484 27.8294 62 19444 13893650 0.00139949 28.5403 63 25702 21083333 0.00121907 29.1397 64 65097 64587942 0.00100788 29.9659 65 17116 20499009 0.000834967 30.7833
Same data through Swift:
Score count
0 0 1 0 2 0 3 0 4 0 5 0 6 0 7 0 8 0 9 0 10 0 11 0 12 0 13 0 14 0 15 0 16 0 17 0 18 6 19 51 20 72 21 30 22 15 23 7 24 16 25 29 26 23 27 38 28 34 29 63 30 98 31 179 32 411 33 964 34 2689 35 10746 36 76533 37 0 38 0 39 0
Error by quality
9 198 313 0.632588 1.98879 10 816 2018 0.404361 3.93231 11 1231 5438 0.22637 6.45181 12 1861 12738 0.146098 8.35355 13 2132 26709 0.0798233 10.9787 14 2552 50880 0.0501572 12.9967 15 2632 84813 0.031033 15.0818 16 2398 125900 0.0190469 17.2018 17 1859 168584 0.0110271 19.5754 18 1381 207474 0.00665626 21.7677 19 1009 240233 0.00420009 23.7674 20 770 269244 0.00285986 25.4366 21 656 293662 0.00223386 26.5094 22 541 314519 0.00172009 27.6445 23 433 325105 0.00133188 28.7554 24 397 319507 0.00124254 29.0569 25 298 289676 0.00102874 29.877 26 191 237145 0.000805414 30.9398 27 110 166898 0.000659085 31.8106 28 54 97332 0.000554802 32.5586 29 19 41216 0.000460986 33.3631 30 11 11516 0.000955193 30.1991 31 1 3133 0.000319183 34.9596
